Paul,
If you do not clean out the rust it will do a lot of grinding in there. R/C engines are bad about internal rust because they often are not run dry, much less have after run oil applied. Methanol is highly hygroscopic, that is it absorbs water, actualy it misces with water, the water causes rust inside the engine. It ruins a lot of ball bearings, but any rust that comes loose inside the engine is a very agressive abraisive.
Pat