Jim,
I am not sure I can answer your question, but I am sure the muffler bolts are metric. The best local spot to find some would be a local hobby shop (if you have one) since most RC cars now are metric and they will usually have a supply. The only issue will be if they have some that are long enough.
I think I still used 4/40 bolts on the mounting setup with planes like the Ringmaster Jr, and Sig Acromaster----basically that's what I have. 2-56 might be ok. I know I have some 2-56 blind nuts. Now that I think about it, I probably would use 2-56 simply because the maple wood on your 1/2a Pathfinder might be too narrow for 4-40 size bolts. Might want to consider using some 2-56 washers under the bolt head to spread the load on the engine lugs.