Steve,
Fox is still in business, you could give them a call.
I've never paid any attention to the engine which is drawn into the plans, especially if the plans are old plans.
My guess is that Yak 9, like all other model airplanes, based on the model's weight and wing area, plenty of engine choices would be available.
I wouldn't view it as a Yak 9. I would just view it as another model that has weight and squares.
What engines do you have in the .40 size?
Charles