Paul,
If you have your tank plumbed for standard flow, then with the height of the fuel being above the spray bar assembly, I would guess that the fuel is just draining down into the engine. To keep this from happening with your current plumbing, I suppose you could keep the nose real high until you are ready to start or use some hemostats to pinch off the line until you are ready to flip. The thing that bugs me about this is that with an inverted mounted engine, the fuel should just run out the venturi on to the ground.
If you have your tank plumbed for uniflow, you could be siphoning the fuel from the tank down to the muffler and maybe into the cylinder from there. After looking at the muffler on your airplane though, I am not too sure that this is what is happening. It could also be that you are siphoning to the venturi as I cannot see the routing of the pressure line to the muffler. In general, the fuel will go to the lowest point and start siphoning there.
Best bet is to keep the nose high until you are ready to flip, pinch off the line going to the spray bar and to give the airplane a tip towards the muffler and a couple flips to clear the cylinder prior to starting.
Best of luck and let us know how it works out.
John