I would not drill holes!
Yes, I do have a lot of experience with Aluminum glue joints. That's part of my job :-)
The problem with gluing wood to Aluminium is the aluminum oxide. One solution is to sand the surface to be glued right before applying the glue.
The better solution is to use anodized aluminum tubing (chromate anodized). The anodization improves the strength of the glue joint and, to a small degree, improves the stiffness of the tube.
I any way, it is very important to carefully clean the aluminum using acetone prior to gluing.
Then, don't just use laminating epoxy. It's always better to use a structural adhesive.
But we are going to run into another overkill here :-)
The way the flaps are designed they would almost work without any glue. The covering film holds all the parts in place :-)
That means: I would use CA
Frank