state of charge is a pretty difficult thing to measure. Overcharging is bad so a small error on the undercharge direction isn't bad. I'm not sure you can tell 2% in a flight.
It's likely the charger is a 5% accuracy device. More accurate components would make the charger expressive.
Your Milwaukee tool battery isn't any more precise.
It's also temperature-dependent, which your charger is likely not considering.
A variety of methods measure SOC. A battery without a BMS would probably only look at the pack voltage.
So the voltage measurement has to be very precise. For best accuracy, the charger has to know the exact cell data ( which it doesn't), wait 10 minutes after finishing the charge (the cells will relax in voltage a little) , and have a temperature correction.
So I would live with it, and understand is not a gas gauge, it is an indicator.