I wonder that, too. It would be good to know, because if we knew, we could determine what to do (how big to make bellcranks, for example) to overcome the effect of line springiness, which would make it a lot easier to fly an airplane accurately. The other parts of the calculation are pretty easy to measure or calculate; aerodynamic forces on the control surfaces are more difficult.
The pertinent parameter in hinge moment, the torque required to deflect the control surface. It is proportional to air density, airspeed squared, control surface span, control surface chord squared (as Ted found out with his Imitation experiments), and the angle the control surface is deflected from the angle to which it would float if the pushrod isn't hooked up. For an airplane maneuvering at a positive angle of attack relative to the airstream, this float angle would be up for both the flaps and elevator. Because flaps are bigger than elevators, and because they are deflected farther from their float angle than elevators, I would reckon that: 1) by far most of the aerodynamic forces (hence hinge moment) on a maneuvering stunt plane are on the flaps, and 2) hinge moment is way more of a problem for planes with flaps than for planes with only elevators.
I can think of four ways to calculate or measure hinge moment:
1. Do the textbook calculation using hinge moment coefficients. You can get some rule-of-thumb values for these coefficients, but they only come close for the particular wing and flap shape for which they were measured.
2. Do a wind tunnel test. This could be as easy as mounting a stunt plane on an automobile and measuring the hinge moments.
3. Do a CFD computation, find the pressure distribution over the flaps, and add it up. There are free programs such as XFoil and Profili that do airfoil calculations, but I don't know if you could trust the data they'd give for pressure distribution over the flaps, where the flow is probably separated. If you know somebody with access to a fancier CFD progam, you could ask him or her to run your stunt plane airfoil. I know such people, but they prefer to do this work for paying customers.
4. Knowing the control system geometry of your airplane, put some strain gauges on your handle and record data for a stunt pattern. I think this would be the best way. I have some cheap luggage-scale strain gauge doodads I intend to do this with, but I haven't gotten around to it.