First as has been stated you need to know (and keep constant track of) how much you put back in the pack. Also keep track of the individual cell voltage.
To make sense of what is happening you also need to consider:
Prop pitch, prop diameter, number of blades, under camber, thickness, line length, line diameter, lap speed, weight of model, KV of motor.
We did not have to be so exact with IC because fuel has a much higher energy density than a battery. Since electricity is less efficient we need to optimize all of the parameters to achieve true Zen happiness.
The battery "could" be at fault but probably not.
Kim