I'll try my best here.
Some server power supplies' ,but not all, will shut down if the load is applied after they are turned on, so just get in the habit of having the charger plugged in to the PS first and you never even have to deal with that.
Just add the batteries together as though they are on !0 amps becomes 1C if you have 4 2500 in parallel, 20 amps 2C etc.
Whether you use a paraboard or a parallel cable the charger see's it as one large 4 cell battery in your case. DO NOT TRY TO CHARGE BATTERIES THAT ARE NOT IN SIMILAR DISCGARGE RATE TOGETHER!!! INOTHER WORDS DO NOT CHARGE A BATTERY THAT YOU FLEW FOR ONE MINUTE WITH A BATTERY THAT YOU FLEW FOR 5!!!!! I usually only parallel charge from storage mode.