I did not get the stock Magnum muffler, no. The engine was NIB from Mark Scarborough, but he bought it NIB from someone else, and somewhere along the line the muffler got gone and there's a tongue muffler in the box instead.
On the CG issue, I may shorten the nose a bit during the build if it seems indicated, if that's what it takes to accommodate the weight of a muffler (someone mentioned that the Magnum 52 is a bit heavy). We fly in McIver State Park, and they're remodelling the camping area closest to us, which means more campers, which means the potential for more noise complaints. I don't want to be the guy who gets us kicked out, so I'm muffling it to RC standards, not CL.
I suppose I could build my own muffler...