So are you using the box to adjust the timer, the ESC, or Clancy's U/Tronics controller?
What ESC brand are you using?
The "standard" servo pulse width range is 1ms to 2ms. I put "standard" in quotes because it's not written in stone, it's just what everyone does, and there are some deviations. Servos are much more tolerant of extra-large ranges (they just move more than 90 degrees) than ESCs (which have microprocessors in them, and therefore display anal-retentive tendencies).
I'm not surprised that a better ESC would recalibrate -- the designer doesn't want it to start up unexpectedly, but he does want it to idle nicely. So as soon as you use the U/Tronics box, the ESC says "ah ha! I'm being used with some weirdo system with non-standard pulse widths -- I'll just memorize that!!".
If it were me, what I would do going forward is to calibrate all my U/Tronics controllers so the throttle pulse width never gets below 1ms. This requires that you either mechanically limit the range of your throttle pot, or that you put an "idle" trim pot in series with your throttle pot to electronically limit the minimum pulse width. This is going to affect the maximum (high-throttle) pulse width, and I honestly don't know what the ESC is going to make of that, what sort of ranges Clancy's controllers deliver, and so whether its worth while to also put in a trim pot to adjust the high-throttle end.
The schematic below is based on an astonishingly whole lot of guesswork on my part (and I hope Clancy sees this post, in case I'm handing out misinformation). But it appears that his controller just sends out a pulse width that's proportional to the total pot resistance, plus a bit. If so then the schematic below should let you adjust both end points. The idle adjustment will be mostly independent of the full throttle, but the full throttle will pretty much track the idle -- so you'd want to set idle, set full throttle, then repeat once or twice to get everything dead on.
White wire
o----------o----o------.
| | |
| | |
| | |
.-. | |
10K | |<--' |
main control | | |
'-' |
| .-. 100K
| | |<--. full-throttle trim
| | | |
| '-' |
.-. | |
1K (or 5K) | |<--. o----'
idle trim | | | |
'-' | |
| | |
| | |
'----o------o----------o
Channel Control Wire
(created by AACircuit v1.28.6 beta 04/19/05 www.tech-chat.de)